Departement of Biological Sciences @ Dartmouth College
|Operating system||mac, windows, linux, matlab|
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TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimationKathleen Greenham, Ping Lou, Sara E Remsen, Hany Farid, C Robertson McClungPlant Methods, 2017 View paper
TRiP is a matlab-based program for estimating circadian period from whole plant image data. TRiP includes a grid-based cropping function that takes each image stack as input and crops the images using grid coordinates to output image stacks for each plant. A motion estimation algorithm is applied to the image stacks and outputs a motion vector for each image over time. The motion vectors are used to estimate circadian period using a single frequency FFT-NLLS method.
Source: TRiP GitHub page