Plant Image Analysis Plant Image Analysis

TRiP

Departement of Biological Sciences @ Dartmouth College
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Scientific article

TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation
Kathleen Greenham, Ping Lou, Sara E Remsen, Hany Farid and Robertson McClung
Plant Methods 2015, 11:33

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Description

TRiP is a matlab-based program for estimating circadian period from whole plant image data. TRiP includes a grid-based cropping function that takes each image stack as input and crops the images using grid coordinates to output image stacks for each plant. A motion estimation algorithm is applied to the image stacks and outputs a motion vector for each image over time. The motion vectors are used to estimate circadian period using a single frequency FFT-NLLS method.


Source: TRiP GitHub page

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Overview
Operating system
mac, windows, linux, matlab,

Licence
open-source, freeware,

Measured variables
movement,

Automation level
automated,

Plant requirements
Dicot,

Image requirements
jpg,

Export formats
txt, png,

Other information
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