PHIV-RootCell


UMR AGAP @ CIRAD

Overview

Measured variables anatomy
Operating system mac, linux, windows
Licence open-source, freeware
Automation level semi-automated
Plant requirements rice
Export formats txt
Other information ImageJ macro

Scientific article(s)

PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification
Marc Lartaud, Christophe Perin, Brigitte Courtois, Emilie Thomas, Sophia Henry, Mathilde Bettembourg, Fanchon Divol, Nadege Lanau, Florence Artus, Charlotte Bureau, Jean-Luc Verdeil, Gautier Sarah, Emmanuel Guiderdoni, Anne Dievart
Frontiers in Plant Science, 2017 View paper

Description

We developed the PHIV-RootCell software to quantify anatomical traits of rice roots transverse section images. Combined with an efficient root sample processing method for image acquisition, this program permits supervised measurements of areas (those of whole root section, stele, cortex and central metaxylem vessels), number of cell layers and number of cells per cell layer. The PHIV-RootCell toolset runs under ImageJ, an independent operating system that has a license-free status.


Source: PHIV-RootCell article

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