Plant Image Analysis Plant Image Analysis

phenoVein

Forschungszentrum Jülich
Download Developer
Scientific article
phenoVein - A tool for leaf vein segmentation and analysis.
J. Bühler, L. Rishmawi, D. Pflugfelder, G. Huber, H. Scharr, M. Hülskamp, M. Koornneef, U. Schurr, S. Jahnke,
2015 , Plant Physiol. , 0(0), 0
View at publisher | Download PDF


Description

PhenoVein is dedicated to automated segmenting and analyzing leaf veins of images acquired with different imaging modalities (microscope, macro photography, etc.) including options for comfortable manual correction. Advanced image filtering emphasizes veins from the background and compensates for local brightness inhomogeneities. The most important traits being calculated are total vein length, vein density, piecewise vein lengths and widths, areole area and skeleton graph statistics like the number of branching or ending points. For the determination of vein widths, a model based vein edge estimation approach has been implemented.


Source: Plant Physiology

Gallery
Share your experience
blog comments powered by Disqus
Submit your own rating
Overview
Operating system
windows,

Licence
open-source, freeware,

Measured variables
venation, surface, length,

Automation level
automated, semi-automated,

Plant requirements
any,

Image requirements
any,

Export formats
csv,

Other information
-