Phenotic


LISA @ Université d'Angers

Overview

Measured variables disease, surface
Operating system windows, mac, linux
Licence freeware, open-source
Automation level automated
Plant requirements any
Export formats -
Other information -

Scientific article(s)

High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis
Céline Rousseau, Etienne Belin, Edouard Bove, David Rousseau, Frédéric Fabre, Romain Berruyer, Jacky Guillaumès, Charles Manceau, Marie-Agnès Jacques, Tristan Boureau
Plant Methods, 2017 View paper

Description

Phenotic is an image analysis procedure for quantifying the leaf area impacted by the pathogen from chlorophyl fluorescence images. Based on the Fv/Fm values of each pixel of the image, a thresholding approach was developed to delimit diseased areas. In a perspective of high throughput phenotyping, the procedure was automated with the software R.


Source: BMC Plant Methods

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