Robatzek lab @ Sainsbury Laboratory
|Measured variables||localisation, n-plasmodesmata, perimeter, shape, width, length, surface|
|Other information||Requires Acapella to run|
A Developmental Framework for Complex Plasmodesmata Formation Revealed by Large-Scale Imaging of theArabidopsisLeaf EpidermisJessica Fitzgibbon, Martina Beck, Ji Zhou, Christine Faulkner, Silke Robatzek, Karl OparkaThe Plant Cell, 2017 View paper
Other tools for the analysis of leaf,cell:
PDQUANT provides an automated image processing workflow that detected and quantified plasmodesmata candidates, identified cell boundaries, and segmented immature cells from older cells. The algorithm segments and quantifies epidermal cells with differentiation of mature from young emerging cells.
Source: Fitzgibbon et al. (2013) The Plant cell , 25(1), 57-70