Plant Image Analysis Plant Image Analysis

NMRooting

IBG2 @ Forzschungzentrum Jülich
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Scientific article

Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging
Dagmar van Dusschoten, Ralf Metzner, Johannes Kochs, Johannes A. Postma, Daniel Pflugfelder, Jonas Buehler, Ulrich Schurr and Siegfried Jahnke
Plant Physiology 2016

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Description

NMRooting can be used to derive Root Structural Architecture parameters from 3D MRI images of soil grown plant roots.

The current release of NMRooting is based on Python 2.7 and requires a range of Python specific packages that can be downloaded separately. Instructions will be provided.



Source: NMRooting website

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Overview
Operating system
windows, mac, linux,

Licence
freeware,

Measured variables
length, angle, topology,

Automation level
automated,

Plant requirements
any,

Image requirements
mri 3d image stacks,

Export formats
-,

Other information
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