Plant Image Analysis Plant Image Analysis

HyDE

Plant Biology Laboratory @ Salk Institute for Biological Studies
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Scientific article
Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis.
B. Cole, SA. Kay, J. Chory,
2011 , Plant J. , 65(6), 991
View at publisher | Download PDF


Description

HyDE (Hypocotyl Determining Engine) is a simple matlab-based program that measures hypocotyl growth in time-series images. The program will output raw length, smoothened length, and growth rate numerical data (though this feature is not implemented yet), as well as avi movies showing where the algorithm has predicted the hypocotyl to be.


Source: HyDE user guide

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Overview
Operating system
windows, mac, matlab,

Licence
freeware,

Measured variables
growth, length,

Automation level
automated,

Plant requirements
any,

Image requirements
any,

Export formats
txt,

Other information
-

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