CellSeT


Center for Plant Integrative Biology @ University of Nottingham

Overview

Measured variables anatomy
Operating system windows
Licence freeware
Automation level semi-automated
Plant requirements any, arabidopsis
Export formats
Other information -

Scientific article(s)

CellSeT: Novel Software to Extract and Analyze Structured Networks of Plant Cells from Confocal Images
Michael P. Pound, Andrew P. French, Darren M. Wells, Malcolm J. Bennett, Tony P. Pridmore
The Plant Cell, 2017 View paper

Description

CellSeT is novel software that can be used to analyse confocal images of plant cells. Image analysis algorithms are used to extract the network structure of all cells. This information is then used to perform quantitative analysis on the cell structure, and additional analysis through the use of an extensible plug-in system.CellSeT is written in Cn- .NET, and as such runs only on Windows machines with an up-to-date version of the .NET framework installed. Plug-ins can be written in any .NET compatible language, such as Cn- or VB. For users who do not have access to a Windows machine, we have successfully used CellSeT in a virtual windows environment.


Source: CellSet website (CPIB)

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