Plant Image Analysis Plant Image Analysis

CellSeT

Center for Plant Integrative Biology @ University of Nottingham
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Scientific article
CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images.
MP. Pound, AP. French, DM. Wells, MJ. Bennett, TP. Pridmore,
2012 , Plant Cell , 24(4), 1353
View at publisher | Download PDF


Description

CellSeT is novel software that can be used to analyse confocal images of plant cells. Image analysis algorithms are used to extract the network structure of all cells. This information is then used to perform quantitative analysis on the cell structure, and additional analysis through the use of an extensible plug-in system.CellSeT is written in Cn- .NET, and as such runs only on Windows machines with an up-to-date version of the .NET framework installed. Plug-ins can be written in any .NET compatible language, such as Cn- or VB. For users who do not have access to a Windows machine, we have successfully used CellSeT in a virtual windows environment.



Source: CellSet website (CPIB)

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Overview
Operating system
windows,

Licence
freeware,

Measured variables
anatomy,

Automation level
semi-automated,

Plant requirements
any, arabidopsis,

Image requirements
longitudinal confocal image,

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Other information
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