Plant Image Analysis Plant Image Analysis

Cefiler

Amap @ CIRAD


1 votes for an average of 3/5
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Scientific article

Automatic characterization of the cell organization in light microscopic images of wood: Application to the identification of the cell file
Brunel, Guilhem; Borianne, Philippe; Subsol, Gerard; Jaeger, Marc; Caraglio, Yves
Plant Growth Modeling, Simulation, Visualization and Applications (PMA), 2012 IEEE Fourth International Symposium on ,pp.58,65

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Description

Cefiler is a fully-automated plugin devoted to the identification of cell files provided by light microscopic images. This module allows cellular type (vessel, fiber, parenchyma,…) to be defined and the geometry of each cell (wall or/and lumen area, wall thickness, circularity,…) to be characterized. The numerical results are saved in csv or xml files readable onto Clinex®.



Source: Cefiler website

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Overview
Operating system
windows, mac, linux,

Licence
freeware,

Measured variables
surface, perimeter, width, shape, localisation,

Automation level
automated,

Plant requirements
any,

Image requirements
any,

Export formats
csv, xml,

Other information
Cefiler is part of the ImageJ plugin Toaster